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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000001_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-2-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:30:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "b971c498-ad83-4f49-b426-303f8827e09d", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 21592, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 2, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000002_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-2-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000008_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-8-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 8, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 8, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:31:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "31388c7d-ad85-450e-a12b-5fc09b71f23a", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 81659, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 8, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000008_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-8-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 8, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 9, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000014_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-15-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 15, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 15, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000021_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-21-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 21, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 21, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000027_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-27-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 27, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 27, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:34:43 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000027_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-27-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 27, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 28, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000033_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-34-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 34, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000039_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-40-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 40, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 40, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:36:53 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "63c046b2-376a-4c04-8f80-37dd447b0b75", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 401501, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 40, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000040_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-40-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 40, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 40, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000046_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-46-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 46, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 46, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "1dec0a75-5eb5-41d8-a256-a6c91a977933", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 461617, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 46, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000046_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-46-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 46, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 47, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000052_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-53-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 53, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 53, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000058_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-59-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 59, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000059_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-59-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 59, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 59, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000065_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-65-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 65, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000065_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-65-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 65, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 66, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000071_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-72-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 72, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:42:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 75, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000074_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-75-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 75, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000077_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-78-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 78, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000078_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-78-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 78, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 78, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000084_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-84-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 84, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 84, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "9f89b478-c882-4c0e-90be-f20337fc1a0c", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 841599, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 84, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000084_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-84-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 84, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 85, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000090_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-90-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 90, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000090_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-91-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 91, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000096_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-97-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 97, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 97, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:46:23 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000097_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-97-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 97, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 97, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000103_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-103-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 103, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 103, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:47:23 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "65a72721-ef9f-4255-a390-f0773decb6bf", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1031756, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 103, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000103_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-103-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 103, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 104, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000109_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-109-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 109, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 110, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000109_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-110-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 110, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 110, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000112_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-113-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 113, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000115_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-116-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 116, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:49:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "79e79428-ecfc-4b8c-be74-3773025e91c0", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1161472, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 116, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000116_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-116-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 116, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 116, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:50:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000122_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-122-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 122, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 122, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:50:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "1de3c85e-5487-4c55-bf8d-90a1e4341fe9", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1221588, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 122, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000122_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-122-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 122, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 123, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000128_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-129-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 129, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 129, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 133, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000134_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-135-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 135, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:52:43 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000135_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-135-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 135, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 135, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000141_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-141-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 141, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 141, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:53:43 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "8012f476-15ac-404c-b926-e7e53f17f5f9", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1411738, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 141, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000141_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-141-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 141, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 142, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000147_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-147-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 147, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000147_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-148-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 148, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 148, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000150_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-151-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 151, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000153_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-154-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 154, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 154, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 18:55:53 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "b8444142-dab2-4e2c-9ae6-bab5f9797dc6", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1541476, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 154, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000154_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-154-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 154, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 154, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000157_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-157-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 157, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000160_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-160-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 160, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000160_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-160-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 160, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 161, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000166_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-166-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 166, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 167, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000166_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-167-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 167, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 167, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000172_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-173-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 173, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000173_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-173-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 173, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 173, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000179_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-179-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 179, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 179, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:00:03 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "8796deb7-0026-4139-b624-dad659874fb2", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1791730, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 179, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000179_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-179-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 179, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 180, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000185_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-185-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 185, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:01:03 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "383038bb-3164-4343-a6c0-9c257cf4c7e8", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1852201, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 185, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000185_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-186-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 186, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 186, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000188_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-189-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 189, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000191_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-192-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 192, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000192_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-192-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 192, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 192, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000198_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-198-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 198, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 198, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:03:13 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "2159db3b-e97d-4621-8e3d-acbacd14df1c", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1981635, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 198, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000198_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-198-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 198, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 199, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000204_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-204-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 204, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 205, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:04:13 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "603c3a2c-c95d-4647-8dcf-5c013e3d9471", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2042209, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 204, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000204_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-205-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 205, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 205, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000208_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-208-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 208, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000209_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-209-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 209, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 209, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000210_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-211-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 211, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 211, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:05:23 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "508bdf3c-6c6e-4e9c-b0d4-b43ae4f3ba60", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2111622, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 211, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000211_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-211-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 211, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 211, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000217_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-217-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 217, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 217, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:06:23 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "d55b1e7d-0d59-4125-ac52-8929aa6d2251", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2171760, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 217, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000217_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-217-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 217, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 218, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000220_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-221-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 221, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 221, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 221, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000223_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-223-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 223, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 224, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:07:23 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "b942f17f-68b5-4d1d-8963-09f8d2b8aa2b", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2232089, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 223, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000223_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-224-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 224, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 224, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:07:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "d1a5a120-bbc4-4d31-8a87-d88c93c842a7", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2241611, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 224, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000229_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-230-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 230, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 230, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:08:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "974abe11-1df2-44a4-a0a4-8041f30f90c0", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2301481, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 230, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000230_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-230-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 230, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 230, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000236_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-236-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 236, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": 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"Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000236_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-236-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 236, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 237, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000242_ETGFP_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-242-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 242, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 243, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-26 19:10:33 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000242_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 }, "FrameKey-243-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 243, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.224999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 243, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "1", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 11463.9, -845.7 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 11577.1, -802.2 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "c857d548-4068-4b84-9064-da40c1cec55c", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-26 18:30:13 -0700", "Date": "2015-08-26", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082615_1", "PixelSize_um": 0.08, "Frames": 300, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082615" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -802.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 11577.1, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000247_TRITC_000.tif", "Andor-CCDTemperature": "24", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.225 } }