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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000001_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-2-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:20:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "826e63af-6cb9-4f96-9f31-6f297c7e9e9e", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 20265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 2, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000002_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-2-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000003_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-4-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 4, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000004_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-4-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 4, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-1. 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"TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "93922383-ac90-4fc6-82d5-0fa7f3938638", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 50377, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 5, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000005_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-5-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 5, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 5, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:20:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "59e0f36c-cad1-432d-a700-1a7ebc8e9cde", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 50845, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 5, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000005_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-6-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 6, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 6, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:20:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "7bc2785a-860d-4f41-a66a-8e8a67332d69", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 60265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 6, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000006_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-6-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 6, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000006_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-6-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 6, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000009_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-9-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 9, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 9, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:21:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "9aed8ddd-50d9-40a1-a9a1-99c66bd9b0c2", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 90375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 9, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000009_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-9-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 9, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 9, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000009_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-10-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 10, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000012_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-13-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 13, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 13, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:21:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "ca96e545-95b6-4fdc-b17a-380546ce1bdf", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 130265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 13, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000013_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-13-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 13, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 13, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:21:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000014_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-15-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 15, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000015_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-15-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 15, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000015_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-15-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 15, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 15, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:22:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "8c6729b4-0d1b-4f89-b46e-22cbb40c566a", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 150848, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 15, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000015_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-16-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 16, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:22:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:22:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "d209a0ec-7f4b-4f33-890e-6757a01e1098", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 160375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 16, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000016_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-16-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 16, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 16, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:22:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "5d8ddd72-dc9f-4d7a-92b5-0c096f7fd6e0", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 160847, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 16, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000016_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-17-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 17, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 17, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:22:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "9a003f12-ea25-4e51-978d-61aee33f8b0b", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 170265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 17, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000017_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-17-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 17, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000020_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-20-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 20, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 20, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:23:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "5f2a84bf-3d03-40f3-a189-cfa19b54b13b", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 200380, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 20, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000020_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-20-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 20, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 20, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:23:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000020_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-21-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 21, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000023_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-23-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 23, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000023_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-24-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 24, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 24, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:23:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "b84dad3b-e6e0-4f87-b282-4348ba64abff", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 240266, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 24, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000024_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-24-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 24, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 24, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:23:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000025_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-26-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 26, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000026_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-26-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 26, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "8ac95eb6-e698-4bd9-9c0b-ae287c97fa8a", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 270376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 27, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000027_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-27-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 27, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 27, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:24:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "420d47ee-7492-4b21-ad14-5a3e2d9df1a6", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 270847, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 27, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000027_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-28-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 28, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 28, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:24:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000028_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-28-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 28, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000028_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-28-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 28, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:24:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000031_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-31-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 31, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 31, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:24:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "f4543d8a-6d00-416d-825b-aa4c3b02157c", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 310377, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 31, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000031_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-31-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 31, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 31, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:24:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000031_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-32-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 32, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000034_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-35-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 35, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 35, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:25:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "e0800462-e14c-4ed6-a8d8-ac8c69aee260", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 350265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 35, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000035_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-35-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 35, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 35, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:25:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000036_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-37-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 37, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000037_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-37-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 37, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 37, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:25:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "db7c7901-8cd1-42d4-bacd-efa8ea84dc32", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 370847, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 37, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000037_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-38-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 38, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "132237ad-e2f6-477d-b387-a0f50c1ebbca", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 380378, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 38, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000038_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-38-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 38, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 38, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "57613578-ec89-48ff-aff7-bc9b96dcae1b", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 380850, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 38, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000038_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-39-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 39, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 39, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "b311fcea-3348-477d-b416-1e894fafa8fa", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 390266, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 39, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000039_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-39-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 39, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000039_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-39-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 39, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000040_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-40-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 40, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000042_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-42-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 42, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 42, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "50573c0e-16dc-4160-a5ba-9ac470b47483", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 420375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 42, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000042_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-42-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 42, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 42, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:26:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000042_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-43-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 43, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000045_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-46-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 46, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 46, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:27:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "dc0b39a6-156b-4be3-b5fc-f8d7b76bd116", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 460265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 46, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000046_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-46-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 46, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:27:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000048_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-48-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 48, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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"Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:27:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "b1d78f42-3efd-4a88-b83b-a9f971b23f13", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 490375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 49, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000049_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-49-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 49, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 49, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:27:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "fa7466f1-384e-4df4-ad87-95f92d2720df", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 490845, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 49, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000049_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-50-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 50, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 50, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:28:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "964d6061-f900-439a-887d-248c584b8984", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 500265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 50, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000050_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-50-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 50, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000050_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-50-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 50, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 50, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:28:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:28:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000053_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-53-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 53, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 53, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:28:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "42cf55cf-647c-4ac2-8ff1-7711ee7ae436", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 530381, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 53, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000053_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-53-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 53, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 53, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000053_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-54-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 54, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000056_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-57-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 57, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 57, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "56c04d67-c16c-4c01-90e5-37d15e1f7743", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 570265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 57, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000057_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-57-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 57, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 57, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000058_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-59-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 59, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "72f7f697-377c-4eb0-b49a-b245b9794e59", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 590851, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 59, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000059_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-60-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 60, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "e426dd03-8845-4ff7-a0a3-84fd47b8f2de", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 600376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 60, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000060_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-60-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 60, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 60, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "fa4e525c-294a-4049-b5cd-4afc6dc9a4a3", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 600843, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 60, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000060_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-61-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 61, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 61, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "fb0906f0-d8ca-4794-8077-495be27b5de3", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 610265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 61, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000061_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-61-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 61, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000061_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-61-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 61, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 61, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:29:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000061_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-62-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 62, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000062_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-62-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 62, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:30:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:30:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000064_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-64-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 64, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 64, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:30:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "f40fa7a5-2c09-4b56-8b38-4474852afeff", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 640375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 64, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000064_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-64-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 64, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 64, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:30:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000064_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-65-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 65, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000067_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-68-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 68, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 68, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "776249f5-04a1-4961-b2f2-e470d50ff6f4", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 680265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 68, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000068_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-68-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 68, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000069_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-70-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 70, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000070_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-70-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 70, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000070_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-70-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 70, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 70, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "17379976-db99-4aa7-922f-7d69bc0e1114", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 700846, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 70, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000070_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-71-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 71, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "32505a6f-9108-4f8c-af31-896c40a496ca", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 710377, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 71, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000071_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-71-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 71, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 71, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "e2fbe8e2-b2ea-4190-9529-a3ad2aa696fd", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 710849, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 71, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000071_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-72-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 72, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 72, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "e2c3f3e9-5f62-4387-92f5-93bd8bedef30", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 720265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 72, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000072_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-72-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 72, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000072_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-72-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 72, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 72, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:31:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000072_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-73-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 73, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000073_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-73-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 73, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:32:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000075_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-75-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 75, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 75, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:32:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "59e914ec-2eb4-4718-b773-09a145a9f44d", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 750376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 75, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000075_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-75-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 75, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 75, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:32:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000075_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-76-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 76, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000078_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-79-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 79, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 79, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:32:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "2c8a9c9d-8764-455e-9738-41e2df981afe", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 790265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 79, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000079_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-79-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 79, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000080_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-81-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 81, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000081_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-81-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 81, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000081_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-81-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 81, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:33:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000081_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-82-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 82, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:33:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "ad86b933-5571-4d52-9109-f36bfc573501", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 820383, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 82, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000082_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-82-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 82, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 82, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:33:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "a432bdc2-86bc-48af-b202-8031672b3909", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 820895, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 82, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000082_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-83-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 83, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 83, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:33:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "830f2250-ba2c-41e3-90d7-91eef2fe64aa", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 830266, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 83, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000083_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-83-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 83, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000084_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-84-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 84, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 84, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:33:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000084_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-85-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 85, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:33:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000086_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-86-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 86, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 86, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:34:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "3e5ea3a4-c70f-47f6-a6f6-b546108c269c", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 860378, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 86, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000086_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-86-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 86, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 86, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000086_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-87-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 87, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000089_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-90-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 90, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 90, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:34:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "5ab95be1-cd85-4bfc-b5bc-d437720fc044", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 900264, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 90, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000090_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-90-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 90, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 90, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:34:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "a6be7b71-9125-4080-be15-6d954db1cd1f", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 930376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 93, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000093_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-93-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 93, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 93, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:35:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "042ff69e-1b29-47c7-bd07-ffbbda5277ee", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 930842, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 93, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000093_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-94-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 94, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 94, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:35:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "c72bce94-91eb-4621-aabb-7b18041c182b", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 940266, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 94, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000094_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-94-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 94, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000095_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-95-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 95, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:35:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:35:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000097_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-97-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 97, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 97, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:35:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "35f35582-73f6-40c9-9fc0-fa5de9b24575", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 970376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 97, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000097_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-97-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 97, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 97, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000097_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-98-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 98, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000100_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-100-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 100, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000100_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-101-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 101, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 101, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:36:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000101_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-101-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 101, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:37:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000104_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-104-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 104, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 104, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:37:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "365b49f3-bb1b-41d6-8170-88dd450b4059", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1040848, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 104, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000104_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-105-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 105, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:37:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000105_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-105-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 105, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000108_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-108-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 108, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 108, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:37:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "e0cbf7de-6018-4c1f-9271-73f9cf586857", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1080375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 108, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000108_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-108-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 108, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 108, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:37:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000108_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-109-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 109, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000109_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-109-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 109, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000111_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-112-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 112, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:38:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "b88eacf6-35b3-4286-be93-4d8a1f525533", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1120265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 112, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000112_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-112-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 112, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:38:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000112_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-112-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 112, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000114_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-115-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 115, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:38:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000115_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-115-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 115, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 115, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:38:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "285fccd4-6943-4ade-8103-6cde0ed75bef", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1150847, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 115, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000115_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-116-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 116, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 116, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:39:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000116_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-116-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 116, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000119_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-119-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 119, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 119, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:39:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "f7516ce0-4396-4d9c-9a89-2e7a269c5fd6", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1190375, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 119, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000119_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-119-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 119, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:39:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000119_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-120-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 120, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000122_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-123-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 123, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 123, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:40:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "caa382a8-d953-4e90-9534-46fbf688010d", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1230265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 123, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000123_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-123-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 123, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 123, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:40:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000123_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-123-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 123, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000126_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-126-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 126, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 126, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:40:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "9d2b8ae3-76b0-4286-8844-88b353413ce4", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1260841, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 126, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000126_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-127-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 127, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:40:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000127_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-127-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 127, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:41:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000130_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-130-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 130, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 130, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:41:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "315c3904-2522-4414-a852-e658c8aca69d", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1300377, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 130, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000130_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-130-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 130, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 130, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:41:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000130_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-131-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 131, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000132_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-132-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 132, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000133_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-134-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 134, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 134, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:42:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "d760c338-6f03-4347-9b2a-d796e0b4d339", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1340265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 134, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000134_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-134-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 134, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 134, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:42:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000134_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-134-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 134, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000134_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-135-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 135, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000135_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-135-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 135, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000135_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-136-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 136, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000136_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-136-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 136, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000137_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-137-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 137, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 137, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:42:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "cf726427-e835-4c71-81ba-6a2239e4458c", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1370884, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 137, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000137_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-138-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 138, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:42:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000138_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-138-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 138, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000138_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-138-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 138, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000141_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-141-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 141, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 141, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:43:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "9aa21dce-22a0-470d-a0e0-3ce622594b15", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1410376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 141, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000141_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-141-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 141, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 141, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:43:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000141_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-142-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 142, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000144_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-144-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 144, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000144_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-145-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 145, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 145, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:43:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "cf84fdd1-4e69-4fb7-863f-24be24b432d2", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1450264, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 145, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000145_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-145-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 145, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:43:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000145_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-145-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 145, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000147_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-147-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 147, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000147_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-148-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 148, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000148_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-148-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 148, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 148, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:44:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "177f2a46-6ce6-4c4c-bc93-8782a1fa97b3", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1480848, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 148, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000148_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-149-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 149, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:44:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000149_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-149-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 149, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:45:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000152_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-152-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 152, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 152, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:45:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "f0125429-cc47-4abb-81cb-34f93bdb0e54", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1520376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 152, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000152_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-152-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 152, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 152, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:45:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "0942b1f5-7957-4bc5-aaeb-7e169fdd358a", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1520846, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 152, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000152_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-153-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 153, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000153_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-153-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 153, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000154_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-154-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 154, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000154_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-154-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 154, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000155_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-156-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 156, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 156, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:45:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "ae3a72fa-867a-401c-a469-a64846f3904a", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1560265, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 156, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000156_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-156-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 156, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:45:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000156_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-156-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 156, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000158_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-159-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 159, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:46:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000159_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-159-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 159, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 159, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:46:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "6a4b0ce6-66be-4214-9ee6-ca3f431b26ae", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1590845, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 159, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000159_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-160-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 160, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 160, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:46:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000160_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-160-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 160, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000161_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-161-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 161, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000163_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-163-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 163, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:46:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "4ee9d23d-0963-4f31-8fb5-12aa7a02abd2", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1630376, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 163, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000163_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-163-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 163, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:46:55 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000163_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-164-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 164, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000166_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-167-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 167, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:47:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000167_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-167-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 167, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:47:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000167_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-167-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 167, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000167_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-168-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 168, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000169_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-170-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 170, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:48:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000170_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-170-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 170, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 170, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:48:05 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "e06feb61-2ed5-48d3-94d3-0136aed4a975", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1700846, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 170, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000170_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-171-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 171, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 171, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:48:15 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "3125411c-a00e-4127-a293-b5857dd6ab95", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1710263, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 171, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000171_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-171-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 171, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000174_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-174-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 174, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 174, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:48:45 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000174_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-174-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 174, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000174_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-175-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 175, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000177_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-178-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 178, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 178, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:49:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "e397817e-8cf5-41b7-9428-576ea39d2e5e", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1780267, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 178, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 10000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000178_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-178-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 178, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:49:25 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, 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"Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, 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"Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000178_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-178-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 178, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": 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"Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000179_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 }, "FrameKey-179-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 179, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "71.349999999999994", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 179, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 14:49:35 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "274a0903-85c0-470b-8d5f-dbad36a3c178", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1790847, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 179, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 10000, "UUID": "a759a32c-9193-475b-88be-f5f7b5dd2eee", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 14:19:46 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_2", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000179_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 71.35 } }