{ "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 0, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "FrameKey-0-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "1", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 0, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 0, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:16:07 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "c5eaf4a7-658f-47c3-93dd-6fc8808956dd", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 457, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 0, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 0, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 0, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000000_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-1-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 1, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 1, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:16:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "d40a7f1b-31aa-42ea-8acc-5818752e16b8", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 30260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 1, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000001_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-2-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:17:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "f53fb755-09d4-4d5f-a4e1-8d7d43caa6f0", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 60260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 2, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000002_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-3-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 3, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 3, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:17:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "0a1e5d68-6db2-427b-8aa8-f861c9352ca1", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 90260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 3, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000003_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-4-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 4, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 4, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:18:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "1a1d9ac6-0505-41c9-99de-122603d879ff", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 120262, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 4, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000004_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-5-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 5, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 5, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:18:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "f7f0eed0-5a17-43b6-8560-46e8ac232af2", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 150260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 5, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000005_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-6-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 6, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 6, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:19:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "f7308e83-a7bd-41f6-8ddd-9daf33a37429", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 180260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 6, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000006_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-7-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 7, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 7, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:19:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "300efcc8-ca2b-45d3-bb84-68d07f47da67", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 210258, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 7, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000007_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-8-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 8, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 8, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:20:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "873fd2d8-0c17-4b38-888a-e3e4954194b7", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 240259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 8, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000008_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-9-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 9, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 9, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:20:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "5fcc2852-5ef4-45f6-a82c-053caf1f2573", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 270258, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 9, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000009_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-10-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 10, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 10, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:21:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "82b39cb7-4f3e-4919-a442-5cab2bd64fe5", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 300260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 10, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000010_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-11-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 11, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 11, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:21:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "d243db66-fd38-4d95-84e6-21411d3f7b1b", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 330260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 11, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000011_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-12-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 12, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 12, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:22:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "f5436436-e5fa-488d-9af9-2c01180779b6", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 360259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 12, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000012_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-13-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 13, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 13, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:22:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "ae6103c2-bd89-4537-98db-b73ec3f65f1c", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 390259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 13, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000013_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-14-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 14, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 14, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:23:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "750c449e-46c0-4945-9800-33dbf7d40aa3", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 420259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 14, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000014_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-15-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 15, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 15, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:23:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "85f956e9-1644-488c-a542-2595ea766dd5", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 450258, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 15, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000015_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-16-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 16, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 16, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:24:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "5f90d1b1-65de-4b57-b1a2-b0974a4e455f", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 480259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 16, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000016_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-17-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 17, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 17, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:24:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "e5ee1a1f-f043-4825-9f00-ed34db7a420f", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 510259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 17, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000017_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-18-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 18, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 18, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:25:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "5ab5378e-a5a3-40a2-9a4f-4b999d4ba471", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 540259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 18, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000018_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-19-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 19, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 19, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:25:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "051d1d28-d356-4f51-a409-3af685eeabb5", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 570259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 19, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000019_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-20-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 20, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 20, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:26:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "e814ad50-c484-42a8-9d06-32211cc8ad35", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 600259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 20, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000020_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-21-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 21, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 21, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:26:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "c0f37b7a-d264-4144-a73a-a2dceb2c6cb2", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 630260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 21, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000021_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-22-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 22, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 22, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:27:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "c3658fdd-0a7c-4de3-bf51-4f1c836cccb5", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 660260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 22, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000022_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-23-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 23, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 23, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:27:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "d3d8b9f8-7de0-4c32-a1b1-028a490047f3", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 690258, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 23, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000023_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-24-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 24, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 24, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:28:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "812e4933-22c5-4c2a-b8e2-27da4320f92a", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 720258, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 24, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000024_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-25-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 25, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 25, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:28:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "f584e2e3-4a06-4b0d-bf77-9e220c992ae7", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 750259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 25, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000025_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-26-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 26, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 26, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:29:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "c1dcea68-d5ad-4000-a753-a990e5260d33", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 780258, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 26, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000026_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-27-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 27, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 27, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:29:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "b563e6b2-c008-4860-99dd-04835630f2a1", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 810260, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 27, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000027_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-28-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 28, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 28, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:30:06 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "a1a53984-abdd-4fa3-a254-edbb04730cd6", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 840259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "Off", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 28, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Out of focus search range", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000028_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 }, "FrameKey-29-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 29, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "68.275000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 29, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 15:30:36 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "0c7d6930-bb87-4d31-8b68-b1d6afc6fcb1", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 870259, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "Off", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 29, "Core-ChannelGroup": "Channel", "PositionIndex": 0, "Width": 1004, "WaitInterval": 30000, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos0", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13038.2, -1034.2 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13107.300000000001, -937.6 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "11b13c54-c4a2-45c3-a011-b90bc3bdc7df", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 15:16:07 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [0], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": ["Phase (ETGFP)"], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_3", "PixelSize_um": 0.08, "Frames": 180, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 1, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [-1], "TimeFirst": false, "ChContrastMax": [65536], "Positions": 2, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Out of focus search range", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": -1034.2, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 13038.2, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000029_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 68.275 } }