{ "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:37 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "FrameKey-0-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 0, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 0, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:57:37 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "fef8c0c4-7169-4fdb-b6b8-1826d941b351", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1650, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 0, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:37 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000000_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-0-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 0, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 0, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:57:37 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "7eeb7723-e0f8-4b3e-8d67-3a38bdb60a12", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 1762, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 0, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:37 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000000_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-0-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 0, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 0, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:57:38 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "a152ecfb-a5ed-47c2-8137-7f8f39ad6d72", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 2282, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 0, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:37 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 1, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000000_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-1-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 1, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 1, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:58:07 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "f8969553-edfe-43b6-884d-266c8d55d044", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 31425, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 1, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:39 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 3, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000001_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-1-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 1, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 1, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:58:07 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "088d84c0-fbd1-4e8f-b43b-7535c8c98005", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 31539, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 1, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:39 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 3, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000001_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-1-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 1, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 1, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:58:07 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "08b40d78-35a1-45f6-b711-2059cc07a142", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 32009, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 1, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:39 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 3, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Focusing", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000001_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-2-0-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "Phase (ETGFP)", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:58:37 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 0, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "Shutter-A", "TILightPath-State": "1", "UUID": "e07d193a-4eb8-46dd-aa89-ccb7ebddf514", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 61432, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 2, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:39 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 3, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000002_Phase (ETGFP)_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-2-1-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "ETGFP", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "2-ETGFP", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "58.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 20, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:58:37 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "1", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 1, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "96e95bdb-5ecc-42c3-9446-5ee61df31518", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 61543, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 2, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:39 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 3, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "20.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000002_ETGFP_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 }, "FrameKey-2-2-0": { "Core-Focus": "TIPFSOffset", "Andor-ReadoutMode": "35.000 MHz", "Channel": "TRITC", "Core-Initialize": "1", "Shutter-A-State": "0", "COM1-Verbose": "0", "TIPFSStatus-FullFocusWaitAfterLockMs": "0.0000", "XYStage-SerialResponse": "", "Andor-FanMode": "Full", "FrameIndex": 2, "XYStage-Version": "Version: USB-9.2d ", "XYStage-BuildName": "STD_XY", "COM1-Description": "Serial port driver (boost:asio)", "TIFilterBlock1-Label": "3-TRITC", "Andor-BaselineClamp": "Enabled", "XYStage-Backlash-B": "0.0400", "Andor-ActualInterval-ms": "138.19", "XYStage-Speed-S": "5.7459", "ROI": "0-0-1004-1002", "Andor-PixelType": "16bit", "COM1-AnswerTimeout": "500.0000", "Camera": "", "Andor-Region of Interest": "Full Image", "XYStage-Error-E(nm)": "400.0000", "XYStage-StepSizeX_um": "0.0100", "COM4-Parity": "None", "Core-ImageProcessor": "", "Andor-Advanced | Snap Image Timing Mode": "Delay for Exposure", "SlicePosition": null, "Andor-CoolerMode": "Fan off at shutdown", "Exposure-ms": 100, "XYStage-StepSizeY_um": "0.0100", "COM1-DataBits": "8", "TIPFSOffset-Position": "69.650000000000006", "Core-AutoShutter": "1", "XYStage-Acceleration-AC(ms)": "100", "Shutter-A-Mode": "Fast", "TILightPath-Label": "2-Left100", "Andor-Pre-Amp-Gain": "3.8x", "XYStage-Name": "XYStage", "NextFrame": 2, "TILightPath-Name": "TILightPath", "Andor-Shutter Closing Time": "20", "Andor-EMSwitch": "On", "Core-XYStage": "XYStage", "AxisPositions": null, "Andor-1. Camera Information : | Type | Model | Serial No. |": "| iXon | DU8285_VP | 4497 |", "Time": "2015-08-27 16:58:37 -0700", "IntensiLightShutter-State": "0", "COM1-Parity": "None", "COM4-Name": "COM4", "Andor-Isolated Crop Mode": "Off", "COM4-BaudRate": "9600", "XYStage-Port": "COM3", "Andor-CCDTemperatureSetPoint": "-70", "TINosePiece-Label": "5-Plan Apo 100x NA 1.40 Oil", "Core-AutoFocus": "TIPFSStatus", "COM1-StopBits": "1", "XYStage-SerialCommand": "", "TIPFSOffset-Name": "TIPFSOffset", "TIScope-DeviceIndex": "1", "BitDepth": 14, "TIFilterBlock1-State": "2", "Slice": 0, "TIPFSStatus-Name": "TIPFSStatus", "XYStage-JoyStick Slow Speed": "5", "COM4-Verbose": "0", "COM3-AnswerTimeout": "500.0000", "Andor-KeepCleanTime": "0.00", "Shutter-A-Controller Info": "SC-v1.12S-", "TIFilterBlock1-ExtraDelayMs": "0.0000", "TINosePiece-Name": "TINosePiece", "TINosePiece-State": "4", "TIScope-DriverVersion": "micusb.sys 3.0.1.9", "Andor-Camera": "| iXon | DU8285_VP | 4497 |", "ChannelIndex": 2, "TIScope-SoftwareVersion": "4.4.1.728", "COM3-Handshaking": "Off", "Andor-Gain": "3", "Core-Shutter": "IntensiLightShutter", "TILightPath-State": "1", "UUID": "9529a53f-e0ef-4ccb-87ae-f83b6405dc69", "Core-Camera": "Andor", "Core-TimeoutMs": "5000", "Core-SLM": "", "XYStage-JoyStick Fast Speed": "60", "Shutter-A-NDSetting": "1", "XYStage-Maximum Speed (Do Not Change)": "8.5760", "ElapsedTime-ms": 62016, "TIPFSStatus-FullFocusTimeoutMs": "5000.0000", "COM1-Handshaking": "Off", "TIPFSStatus-State": "On", "Andor-Shutter TTL Value": "High to Open", "IntensiLightShutter-Description": "Nikon IntensiLight Shutter adapter", "Frame": 2, "Core-ChannelGroup": "Channel", "PositionIndex": 1, "Width": 1004, "WaitInterval": null, "TITIRF-Mirror": "Out", "Shutter-A-Port": "COM1", "TIFilterBlock1-Name": "TIFilterBlock1", "IntensiLightShutter-Name": "IntensiLightShutter", "COM3-StopBits": "1", "PositionName": "Pos1", "TINosePiece-ExtraDelayMs": "0.0000", "PixelSizeUm": 0.08, "Height": 1002, "Andor-TransposeMirrorX": "0", "XYStage-CompileDate": "May 30 2013:16:54:11", "IntensiLightShutter-ND": "16", "COM3-Verbose": "1", "TIScope-FirmwareVersion": "Ti-E V1.30", "Andor-TransposeMirrorY": "0", "Andor-Shutter Opening Time": "20", "Summary": { "Slices": 1, "InitialPositionList": [ { "DeviceCoordinatesUm": {"XYStage": [ 13043, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos0", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12865, 2222 ]}, "GridColumnIndex": 0, "Label": "Pos1", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 12927.7, 2319.5 ]}, "GridColumnIndex": 0, "Label": "Pos2", "GridRowIndex": 0 }, { "DeviceCoordinatesUm": {"XYStage": [ 13056.4, 2310.7000000000003 ]}, "GridColumnIndex": 0, "Label": "Pos3", "GridRowIndex": 0 } ], "Interval_ms": 30000, "UUID": "eec15304-6ee4-4c81-af0e-46f3c49d8f38", "UserName": "cellshape", "Depth": 2, "PixelType": "GRAY16", "Time": "2015-08-27 16:57:39 -0700", "Date": "2015-08-27", "z-step_um": 0, "MetadataVersion": 10, "PositionIndex": 3, "SlicesFirst": false, "ChContrastMin": [ 0, 0, 0 ], "Width": 1004, "PixelAspect": 1, "MicroManagerVersion": "1.4.20", "ROI": [ 0, 0, 1004, 1002 ], "ChNames": [ "Phase (ETGFP)", "ETGFP", "TRITC" ], "IJType": 1, "GridRow": 0, "Comment": "", "Height": 1002, "GridColumn": 0, "Prefix": "082715_4", "PixelSize_um": 0.08, "Frames": 270, "BitDepth": 14, "KeepShutterOpenChannels": false, "Source": "Micro-Manager", "Channels": 3, "ComputerName": "vulcan_computer", "CustomIntervals_ms": [], "KeepShutterOpenSlices": false, "ChColors": [ -1, -13369600, -65536 ], "TimeFirst": false, "ChContrastMax": [ 65536, 65536, 65536 ], "Positions": 4, "Directory": "D:\\Rico Vulcan\\082715" }, "Source": "Andor", "XYStage-OverShoot(um)": "0.0000", "XYStage-Wait_Cycles": "0", "COM4-StopBits": "1", "COM3-Name": "COM3", "IntensiLightShutter-Port": "COM4", "Andor-Binning": "1", "Andor-FrameTransfer Help": "Should only turn on FrameTransfer if using Burst or Live mode.", "COM4-DataBits": "8", "TIPFSStatus-Status": "Locked in focus", "TIScope-DeviceAddress": "USB_DEVICE(1)", "COM3-DataBits": "8", "XYStage-MotorOnOff": "On", "XYStage-Description": "ASI XY stage driver adapter", "TITIRF-Name": "TITIRF", "Andor-Shutter": "Open", "Binning": "1", "Andor-ReadoutTime": "38.19", "COM4-Handshaking": "Off", "Andor-FrameTransfer": "Off", "Andor-Description": "Andor camera adapter", "COM3-DelayBetweenCharsMs": "0.0000", "PixelType": "GRAY16", "Andor-TransposeXY": "0", "COM1-DelayBetweenCharsMs": "0.0000", "COM4-DelayBetweenCharsMs": "0.0000", "Andor-Advanced | Snap Image Additional Delay (ms)": "0", "TILightPath-ExtraDelayMs": "0.0000", "Andor-Exposure": "100.00", "Andor-TransposeCorrection": "0", "COM4-AnswerTimeout": "500.0000", "Andor-CCDTemperature Help": "Wait for temperature to stabilize before acquisition.", "COM4-Description": "Serial port driver (boost:asio)", "COM3-Description": "Serial port driver (boost:asio)", "YPositionUm": 2222, "COM3-Parity": "None", "COM1-BaudRate": "9600", "Andor-VerticalSpeed": "3.73", "Shutter-A-Description": "Sutter Lambda shutter adapter", "XYStage-TransposeMirrorY": "0", "XPositionUm": 12865, "XYStage-TransposeMirrorX": "0", "Andor-TimeOut": "10000", "Andor-Trigger": "Software", "Shutter-A-Name": "Shutter-A", "IntensiLightShutter-Version": "V1.00", "FileName": "img_000000002_TRITC_000.tif", "Andor-CCDTemperature": "-66", "TITIRF-Position": "0", "Core-Galvo": "", "XYStage-JoyStick Reverse": "Off", "COM3-BaudRate": "9600", "Position": "Default", "XYStage-OnlySendSerialCommandOnChange": "Yes", "Andor-VerticalClockVoltage": "Normal", "Andor-OptAcquireMode Description": "", "COM1-Name": "COM1", "CameraChannelIndex": 0, "SliceIndex": 0, "XYStage-FinishError-PCROS(nm)": "24.0000", "ZPositionUm": 69.65 } }